PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138417.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 313aa    MW: 33917.1 Da    PI: 7.8119
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.12.7e-69912422154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssae 95 
                     rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s     +  ++ +kr+r++   +   +ss++l+s +
  XP_009138417.1  91 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSgGSSIPKRHRDT---TLPETSSSRLPSDS 182
                     67899****************************************************999887766578888898886...667778889999** PP

          DUF702  96 skkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                     +  e+ ++s+P+evss+a+frcv++s+vdd g+ ++aYqt+v+igGh+fkGiLydqG+e+
  XP_009138417.1 183 AGLEMGKASFPPEVSSDALFRCVKMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPES 242
                     ******************************8899************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.6E-6294241IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.1E-2796138IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.7E-28192240IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAGMFSLGGN NNNNNNNGYQ EEGNQQQQKT NWVWYRSNTN TNNINPSSSV WQIPPEQQIL  60
MHHHQPHPQQ QSIDLYPGHQ IEVSDIATSS RSITISCRDC GNQAKKDCTH MRCRTCCKSR  120
GFDCSTHVRS TWIPVARRRE RQQQLHMSTS GGGGGSGGSS IPKRHRDTTL PETSSSRLPS  180
DSAGLEMGKA SFPPEVSSDA LFRCVKMSGV DDGGDGQYAY QTTVNIGGHL FKGILYDQGP  240
ESSYMSGGSG GSDHHSSSAG GGNTFNTPAI ADGGRGGSSA MFVDPNSSSY YSSNMMTMFV  300
PPGTQFYQNP PRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052650.0GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138417.10.0PREDICTED: protein SHI RELATED SEQUENCE 2-like
SwissprotO655171e-150SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLM4DML90.0M4DML9_BRARP; Uncharacterized protein
STRINGBra017754.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-119Lateral root primordium (LRP) protein-related